PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 188aa    MW: 21220.2 Da    PI: 8.5807
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0472genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY185.82.3e-5771735170
        YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
                    +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a+ +  + +++  +  ++  e+    +++l s  + ++++ + ++   l+
  Gh_A06G0472   7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAASQSLSWQDI--QAPNNAIED---YRRDLGSSSKCSHNKLSMRP--PLP 97 
                  579****************************************9998877655555542..222223333...33344444444444444444..477 PP

        YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikee............iqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +n +ee      v+rPPekrqrvPsaynrfik +            iqrika+nPdishreafs+aaknWahfP+ihfgl
  Gh_A06G0472  98 NNATEERV----VNRPPEKRQRVPSAYNRFIKYDilntinlygrlnIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 173
                  78777766....89******************752223333333337*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-629173IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSSCIEVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAASQSL  60
SWQDIQAPNN AIEDYRRDLG SSSKCSHNKL SMRPPLPNNA TEERVVNRPP EKRQRVPSAY  120
NRFIKYDILN TINLYGRLNI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLETNNQ  180
TKMNNVSG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3727814e-35KT372781.1 Mentha spicata YABBY family protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452487.11e-124PREDICTED: axial regulator YABBY 5-like isoform X2
SwissprotQ8GW462e-79YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0D2U9P11e-124A0A0D2U9P1_G
STRINGVIT_11s0016g05590.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-80YABBY family protein